FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482086
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14220.29496811772173426No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13590.2818999099745689No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA12250.2541040395282169No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10100.20950618769265236No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9820.20369809536057884No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8780.18212518098430572No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8150.16905697323714025No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACCCA7780.1613819940840431No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC7320.1518401281099223No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6900.143127989611812No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6790.1408462390527831No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6650.13794219288674633No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT6480.13441585111370172No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6380.13234153242367544No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG6030.12508141700858352No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG5940.1232145301875599No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5590.11595441477246798No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5360.11118348178540759No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5200.10786457188136556No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4950.1026787751562999No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4930.10226391141829466No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT4890.10143418394228415No Hit

[OK]Adapter Content

Adapter graph