FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464302
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC17330.37324844605450763No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16890.36377185538722645No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15160.3265116238999617No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14840.3196195579601208No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13790.2970049665950179No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11600.24983739031923186No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11060.2382070290457504No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10300.2218383724386283No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9470.20396207640716604No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8950.1927624692549246No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCA8700.1873780427394239No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8050.17337853379912213No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7720.1662710907986612No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG7070.15227158185835943No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6940.14947168007029907No Hit
CGGAACCGGCAGTGGCGGTTCGGTGGAACGGGATGCGATCA6820.14688715534285876No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6680.14387187649417835No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6550.14107197470611801No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6440.13870282703929768No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5890.12685708870519619No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAG5300.11414984212861456No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5270.11350371094675449No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5230.11264220270427437No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5090.109626923855594No Hit
CTTCACTTTACGATCCGGTTTCAGGTTACGGTCGACCGGAG4780.10295023497637312No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4710.10144259555203296No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4700.10122721849141292No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)