FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464302
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36530.7867724024449604No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT33970.7316358749262334No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT18100.38983247972224977No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16190.3486954611438245No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14160.3049739178379589No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11470.2470374885311715No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10760.2317457172271496No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10460.22528440540854874No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT9990.21516168355940746No Hit
CCGGATTTTGAACAGAACATTGCGACCACCACC8990.1936239774974047No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8090.17424004204160223No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC7140.15377922128269964No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGAAC7000.15076394243401925No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6930.14925630300967904No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6820.14688715534285876No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6740.14516413885789853No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6590.14193348294859812No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5820.125349449280856No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGGTG5520.11888813746225517No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5430.11694974391667493No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5390.11608823567419481No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5350.1152267274317147No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5170.1113499403405542No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5140.11070380915869413No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC5090.109626923855594No Hit
CCGGGTACCTTCGACTTCTCCTCTTTTGGTATG5010.10790390737063377No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4980.10725777618877369No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4960.10682702206753364No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG4850.10445787440071333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)