FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454829
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17240.37904355263186823No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC17190.37794423838409597No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14430.3172620919070684No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14270.3137442863141972No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12570.2763676018899411No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11850.2605374767220208No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11170.24558680295231833No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9960.21898339815623014No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8780.1930395819088053No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8450.18578410787350852No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8260.181606713731974No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCA8190.18006767378509286No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG7830.17215261120113273No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7540.16577658856405375No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7240.1591807030774203No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7120.15654234888276694No Hit
CGGAACCGGCAGTGGCGGTTCGGTGGAACGGGATGCGATCA6330.13917318376796556No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6290.13829373236974776No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6200.13631496672375773No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5970.1312581211840054No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC5170.11366909321964959No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5120.11256977897187734No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5070.11147046472410511No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4890.10751293343212504No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4880.1072930705825706No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAG4780.10509444208702612No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG4770.10487457923747166No Hit
CTTCACTTTACGATCCGGTTTCAGGTTACGGTCGACCGGAG4700.10333553929059051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)