FastQCFastQC Report
Sun 21 May 2023
EGAF00007930163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454829
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG38070.8370178682537832No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT32460.713674809653738No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20360.44764076169285605No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16500.3627737017648391No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16370.3599154847206313No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14670.3225388002963751No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11580.2546011797840507No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10320.22689846074019027No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9660.2123875126695967No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT9440.20755052997939882No Hit
CCGGATTTTGAACAGAACATTGCGACCACCACC8140.17896835953732063No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC7770.17083343410380603No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7750.17039370840469714No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7150.15720193743143027No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6680.14686838350237122No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6540.14379030360860895No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6470.1422512636617278No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGAAC6450.14181153796261892No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG5490.12070470440539191No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5220.11476840746742181No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5200.11432868176831291No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5140.11300950467098624No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5100.11213005327276844No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGGTG5060.11125060187455066No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC5020.11037115047633286No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5020.11037115047633286No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4990.10971156192766951No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4910.10795265913123393No Hit
CCGGGTACCTTCGACTTCTCCTCTTTTGGTATG4780.10509444208702612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)