FastQCFastQC Report
Sun 21 May 2023
EGAF00007930164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465753
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC32070.6885623925127696No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC30090.6460505890461253No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT22880.49124750672566786No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG15550.3338679514678381No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG15480.33236500892103754No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15330.32914441774932207No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA15100.3242061779526917No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA14860.3190532320779469No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG14130.3033796883755982No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13120.28169437448604734No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC9490.2037560681305327No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8970.1925913520685857No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG8950.19216193991235697No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6850.14707366350834025No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6680.14342366018039604No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6100.13097070764976285No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC6060.1301118833373054No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5700.12238246452518824No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC5430.11658540041610038No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5050.1084265694477545No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5050.1084265694477545No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4950.10627950866661084No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTG4950.10627950866661084No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG4870.1045618600416959No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4850.1041324478854672No Hit
TGCCAGTTCTTTACGACAACCGCCGTCGTGACGTTTGTCCA4840.10391774180735283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)