FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465753
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT66171.4207101188827553No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG33910.7280683108858129No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC32330.6941447505437431No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT30010.6443329404212104No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21830.4687033685236595No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC16230.34846796477961495No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA14530.3119679315001728No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG13740.295006151329138No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA9470.203326655974304No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC8930.19173252775612826No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8680.1863648758032691No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7250.15566190663291488No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6680.14342366018039604No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6660.1429942480241673No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6630.14235012978982423No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6350.13633835960262197No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6300.13526482921205016No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5820.12495893746256063No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5590.12002069766593021No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5320.11422363355684235No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5200.11164716061946998No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5080.1090706876820976No Hit
AACTACCCGCGTGATTCTAAAACCATTATCAAA5050.1084265694477545No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT5030.10799715729152576No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC4850.1041324478854672No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4800.10305891749489537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)