FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458527
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8180.1783973462849516No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6950.15157231744259334No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6050.13194424755794099No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5300.115587522654064No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4690.10228405306557738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)