FastQCFastQC Report
Wed 31 May 2023
EGAF00007930168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473220
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9110.1925108828874519No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7570.1599678796331516No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6020.12721355817590127No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5730.12108533029035122No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4960.10481382866320106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)