FastQCFastQC Report
Wed 31 May 2023
EGAF00007930169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473220
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9950.2102616119352521No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9320.19694856514940198No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9270.19589197413465198No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6530.13799078652635138No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5730.12108533029035122No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5700.1204513756815012No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5230.11051942014285111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)