FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457106
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11160.2441446841651608No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC5520.12075973625373547No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC5290.11572808057649649No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5270.11529054530021482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)