FastQCFastQC Report
Wed 31 May 2023
EGAF00007930172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461573
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10380.22488317124268534No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8830.19130235087407627No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6280.13605648510636453No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG5100.11049173153542342No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4640.10052581065183623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)