FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441556
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10250.23213363650363716No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8540.19340695177961573No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5700.12908894908007137No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG5140.1164065260125556No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4470.10123291269963494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)