FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493672
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15360.3111377594840299No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15010.30404803189162033No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14440.2925019040982677No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT13220.26778913934758297No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT11030.22342770098364909No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG10810.2189713007827059No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT10070.2039815910158972No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9140.1851431719846376No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8770.17764831710123322No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG8670.17562268064625905No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8540.17298935325479264No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8010.16225348004342965No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT7930.16063297087945033No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5640.11424589606054222No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5360.1085741139866146No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5220.1057382229496508No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5090.10310489555818438No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG4960.10047156816671797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)