FastQCFastQC Report
Sun 21 May 2023
EGAF00007930180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476807
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14430.3026381743556617No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG14060.29487822116705503No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13220.27726103014427217No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11880.24915741589364251No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG10410.21832733160377257No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10390.21790787467465875No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9440.19798367054174962No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8590.18015675105440984No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8310.17428435404681558No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG7920.166104943929095No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT7900.16568548699998112No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7870.16505630160631032No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7760.16274928849618397No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5410.11346309932530353No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG4990.10465450381391213No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT4920.10318640456201357No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT4880.10234749070378582No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4790.10045993452277337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)