FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469448
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14300.3046130774867504No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14290.3044000613486478No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13090.2788381247763331No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12230.2605187368995075No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11640.2479507847514528No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11250.23964315536545047No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10330.2200456706600092No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9970.21237708968831476No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9540.20321739574990202No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9270.19746596002113123No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7950.16934782979158503No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7820.1665786199962509No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7790.16593957158194306No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7700.16402242633901945No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7610.16210528109609584No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7290.1552887646768119No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6790.1446379577716808No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6640.14144271570014144No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG6520.13888652204290997No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6500.13846048976670472No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG5920.12610555375675261No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5120.1090642627085428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)