FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469448
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT30980.659923995841925No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG24200.5154990542083469No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT18380.39152366183262044No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15350.32697977198752576No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT15300.32591469129701267No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12480.2658441403520731No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11560.24624665564663178No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10360.22068471907431708No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT9840.2096078798929807No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9080.19341865339718137No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8880.18915833063512894No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8620.1836199110444607No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8440.17978562055861352No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8200.17467323324415057No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8090.17233005572502172No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7340.15635384536732505No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC7330.1561408292292224No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7120.15166749032906734No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6850.14591605460029652No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5980.12738365058536835No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5410.11524173071351886No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5230.11140744022767166No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5180.11034235953715854No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5060.10778616587992706No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGGCA4760.10139568173684838No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA4700.10011758490823265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)