FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519822
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18340.3528130783229644No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17790.3422325334441405No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11110.2137270065522429No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7460.14351066326550244No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7220.1388936982274702No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6930.13331486547318122No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6810.13100638295416508No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6730.12946739460815432No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAG5600.10772918422075248No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5510.1059978223314904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)