FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519822
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG44890.863564835655282No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15880.30548918668313385No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8080.15543782294708575No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7440.14312591617899972No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7290.14024031303022957No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7240.13927844531397288No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7170.13793183051121347No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6180.11888684972933042No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5990.1152317524075549No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5930.11407751114804682No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5770.11099953445602533No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5680.10926817256676324No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCGAC5390.10368933981247427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)