FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534242
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG27600.5166198090004156No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25930.4853605669340861No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13250.24801494453824297No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13100.24520722818497984No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6600.12353951954357763No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC6020.11268301631096021No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5940.11118556758921987No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5720.10706758360443396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)