FastQCFastQC Report
Sun 21 May 2023
EGAF00007930200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520682
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12340.23699686180816698No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12250.235268359574558No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10900.209340826070423No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10580.20319504035092437No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9390.18034039970653873No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6480.1244521608198478No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5880.11292881259578783No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5800.11139236616591318No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5430.10428630142774284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)