FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520682
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG27960.5369880272411952No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24520.47092083075658464No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT24070.46227831958853965No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13300.25543421896666296No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12790.24563937297621194No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5720.1098559197360385No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5530.10620685946508618No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5410.10390218982027417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)