FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490113
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8730.17812218814844738No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG7950.16220749092556208No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7410.15118962361741067No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6540.1334386151765001No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6130.1250731974054963No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5370.10956656934217211No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5160.1052818431667799No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4940.10079308241160712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)