FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491602
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG37790.768711274567638No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23210.47212989369449265No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15970.32485628618272505No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13270.2699338082432537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12750.25935614582528144No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG11560.23514957221492183No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9760.1985345869219409No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9690.19711067082721387No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT9380.19080475669342273No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8870.18043051086041145No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8350.1698528484424392No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8200.16680159966802413No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8160.16598793332818013No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8120.1651742669883361No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7720.1570376035898959No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7540.1533761050605978No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG7440.15134193921098776No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA7360.14971460653129973No Hit
GAACGTACCACTGACGGTAAACTGGATCCGCGT7260.14768044068168965No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC6940.1411711099629375No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6810.13852669435844442No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6750.1373061948486784No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6620.13466177924418532No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6500.13222078022465328No Hit
TGCCCACAGTCTGGCGGTAACACCAACCTGGGT6260.12733878218558914No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5500.11187912172855277No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5190.10557320759476162No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG4980.10130145931058052No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGGTA4970.10109804272561951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)