FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507791
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16220.31942275463724246No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15370.3026835843880652No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13550.2668420669133561No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13430.26447888993700164No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11780.231985206512128No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT11670.2298189609504698No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA10740.21150433938372284No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9430.18570632405852014No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG8770.1727088506885707No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8470.16680090824768457No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8470.16680090824768457No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG7750.1526218463895579No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7740.1524249149748617No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7690.1514402579013807No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7680.15124332648668448No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA7450.14671390394867181No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6930.1364734703844692No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6920.136276538969773No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGC6900.1358826761403806No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6710.1321409792611527No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6700.13194404784645652No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6580.12958087087010206No Hit
TGCGCTCAGAGTGGTCGGTGGCGTGGTGGTGCTGGAACAAC6170.12150668286755771No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC6010.11835578023241845No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5620.11067545505926651No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5390.10614603252125383No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5380.10594910110655763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)