FastQCFastQC Report
Wed 31 May 2023
EGAF00007930209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507791
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG40740.8022985834723341No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17150.3377373762039894No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13580.2674328611574447No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13210.2601463988136851No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG11920.23474224631787488No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG10530.20736877967510256No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10080.1985068660137734No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT9790.19279585498758348No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9740.19181119791410245No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8770.1727088506885707No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8670.17073953654160864No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8500.1673917024917732No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA8230.1620745542949757No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8170.16089296580679846No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8150.16049910297740608No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8010.1577420631716592No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG7590.14947094375441866No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7440.1465169725339756No Hit
GAACGTACCACTGACGGTAAACTGGATCCGCGT7420.14612310970458317No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG7330.14435072697231735No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6990.13765505887264642No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC6970.137261196043254No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6900.1358826761403806No Hit
TGCCCACAGTCTGGCGGTAACACCAACCTGGGT6450.12702076247905142No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5660.11146318071805132No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5550.10929693515639308No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5520.10870614091230447No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGGTA5180.10201047281263355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)