FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465564
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10740.23068793978915894No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10080.21651158594736705No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9050.19438788222457062No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8410.18064111486283302No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7780.1671091407411226No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6570.14111915869783745No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5900.12672801161601843No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5820.12500966569580124No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5370.11534396989457947No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5100.10954455241384645No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5050.10847058621371068No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4920.10567827409335773No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4730.10159720253284188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)