FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444552
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA24790.5576400511076319No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC19370.43571955586748No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG17340.3900556065432165No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG15940.35856322769889687No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTAC13310.2994025445842106No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12900.29017977649408844No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG11730.26386114560276414No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11360.2555381597653368No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA10090.2269700732422754No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9010.20267595241951447No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7560.17005884575932623No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC7070.15903651316381437No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6880.1547625474635138No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG6480.14576472493656534No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG6410.14419010599434937No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5860.13181810001979521No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5810.13069337220392663No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5740.12911875326171068No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5730.12889380769853695No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5620.12641940650362612No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG5470.12304522305602043No Hit
TGCAGCTGCACGCTGAGCCGCGGTACCCGGACGGCGACGGT5400.12147060411380446No Hit
CAGGGACGGACCACCGGCAGCGATCATAGAGCTGAACGGGC5210.11719663841350393No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5180.1165218017239828No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGT5100.11472223721859309No Hit
ACGACCAGACAGCGGGGTGGTCTTGCCCGGTTTCGGGCGTT4810.10819881588655544No Hit
ACCACGGTGTTTCTTCGGGGTGGATGCAATGCATGGACCCG4530.10190034011769152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)