FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444552
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG29380.6608900646043658No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA24100.5421188072486458No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22180.49892925911929314No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG20870.46946139034353684No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC17120.3851068041533949No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG16980.38195756626896293No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGCGT14660.32977019561266174No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT13230.29760298007882097No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG12560.2825316273461822No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC12420.27938238946175026No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11570.2602620165919847No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10340.23259371232161818No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9080.20425057136173047No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG7750.17433281145962679No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA7720.17365797477010564No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7090.15948640429016178No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6110.137441739099138No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5960.13406755565153233No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGTCC5940.1336176645251849No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5730.12889380769853695No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5710.12844391657218954No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG5380.12102071298745704No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5130.11539707390811424No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCACC5110.11494718278176681No Hit
CCTCAGAAAGCTACTCCGGGTCCGGTAGCGGAA5020.11292267271320341No Hit
TCCACCATGTCCCTGGGCCGTGGTTACGGCTGG4980.11202289046050855No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4680.1052745235652972No Hit
CTGAAATACCAGGAATTTTTCTGGGACGCCAAC4550.10235023124403894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)