FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481938
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG12130.25169212637310195No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11480.23820491432507918No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA10140.2104005079491553No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10010.20770306553955076No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9980.20708057882964198No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8890.18446356170295763No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8100.16807141167536072No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8000.16599645597566492No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG8000.16599645597566492No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7420.15396171291742922No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6740.1398520141594977No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG6470.13424963377031898No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6140.1274022799613228No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA6000.1244973419817487No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT5990.12428984641177912No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5490.11391506791330006No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5270.10935016537396926No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5180.10748270524424304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)