FastQCFastQC Report
Sun 21 May 2023
EGAF00007930217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481938
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14540.301698558735771No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG13140.2726491789400296No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12800.2655943295610639No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC12080.25065464852325403No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT12070.25044715295328446No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10080.20915553452933777No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA10060.20874054338939863No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8590.1782386946038702No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA8390.1740887832044786No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8200.17014636737505653No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7840.1626765268561516No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG7420.15396171291742922No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6910.14337943884898058No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC6120.12698728882138366No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5960.12366735970187036No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5840.12117741286223539No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5650.11723499703281334No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5450.11308508563342172No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5130.10644522739439513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)