FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences294907
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9310.3156927438141516No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6090.20650577978820442No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4480.15191229777523083No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG4130.14004414951154093No Hit
CAGGGTATCGTGTGCGTAAGTATCGTTGTCGTTGAACAGGA3670.12444601179354847No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT3550.12037693238885479No Hit
TCAGCATTTACCGAAGTGAGACAGGGTCAGGGTGCCGTTAG3490.11834239268650795No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG3160.10715242432360034No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA3120.10579606452203576No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA3110.10545697457164463No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA3050.10342243486929778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)