FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences294907
Sequences flagged as poor quality0
Sequence length33
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14500.4916804280671534No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9130.30958912470711103No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6310.21396575869680948No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5320.1803958536080866No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT4940.16751043549322328No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC4540.15394683747757767No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT4100.1390268796603675No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC3690.12512419169433076No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC3640.12342874194237505No Hit
CTGGTTGATGAAGGTAAAGTCGATCTGGACGCT3570.12105511228963706No Hit
GTGAGCGTAGACTGCTCCGAATACCCAAAACCG3310.11223877357946742No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC3260.11054332382751171No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC3240.10986514392672944No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC3020.10240516501812434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)