FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437945
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9460.2160088595599904No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9200.21007204100971585No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8330.19020653278379707No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6580.15024717715694894No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6480.14796378540684332No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6390.14590873283174827No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6340.1447670369566955No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6050.1381452008813892No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGT6020.13746018335635754No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4840.11051616070511137No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4610.10526435967986847No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4600.10503602050485793No Hit
GGTGGAGTGCACAGTCGGTTCTGCGCTGGCGATGGTGTTAA4460.10183927205471006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)