FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437945
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23100.5274634942743952No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21230.4847640685474204No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13660.3119113130644259No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11600.2648734430122504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7060.16120745755745586No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6720.1534439256070968No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6270.14316866273162154No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6160.14065693180650538No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6160.14065693180650538No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCACAG5700.1301533297560196No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5180.11827969265547043No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4670.10663439472993184No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4430.10115425452967838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)