FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453423
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG25270.5573162367149439No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14090.31074735952962246No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11920.26288917853748045No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7430.16386464736019127No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7020.1548223182326437No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6510.14357454297642597No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6490.14313345375069197No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6440.14203073068635688No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCACAG5740.12659260778566592No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5200.11468319869084717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5200.11468319869084717No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5030.11093394027210793No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4660.10277378959602844No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4660.10277378959602844No Hit
ACCATGACCCGTCACCCGCACCCACATCTGTCC4620.10189161114456037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)