FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537737
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18920.35184486096363093No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15110.28099238103385116No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13390.24900648458261193No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC10410.19358905933569756No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT10240.19042766259342392No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9510.17685225305307242No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA8770.16309087899846952No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA8470.1575119435709278No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8360.15546633391416248No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTGTG7780.14468039208758185No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7620.14170495985955958No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6540.12162079232040943No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6450.11994711169214689No Hit
GAAGCAACTATCAAAAAAGAACAGAAGCTGATC6320.11752957300687883No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6150.11436817626460519No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6070.11288046015059407No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC6060.11269449563634268No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6020.11195063757933711No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6000.11157870855083432No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC5830.10841731180856069No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGGGC5820.1082313472943093No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5800.10785941826580651No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5560.10339626992377315No Hit

[OK]Adapter Content

Adapter graph