FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504319
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA21810.4324643727482011No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20650.40946305810409683No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13690.2714551702394714No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13000.25777335377013355No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10950.21712447875253557No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10570.20958956533463938No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA8460.16775096714579463No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG7600.15069826835792424No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7230.14336164213523583No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6410.12710209212819665No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA6240.12373120980966412No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6070.12036032749113161No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5340.10588536224096255No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5320.10548878785054698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)