FastQCFastQC Report
Wed 31 May 2023
EGAF00007930227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504319
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG52341.0378351797175995No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT28840.5718602709792809No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22440.4449564660462921No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15490.3071468653768746No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14510.2877147202465106No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10590.20998613972505498No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG7580.15030169396750867No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7430.14732738603939174No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6740.13364556957005386No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6140.12174833785758618No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC6090.12075690188154718No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC6020.11936889151509263No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5440.10786823419304051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)