FastQCFastQC Report
Wed 31 May 2023
EGAF00007930234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566144
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13180.23280296179063986No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12680.22397128645715575No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12440.21973208229708344No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG11750.2075443703368754No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11350.2004790300700882No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG10060.1776933077096993No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC10000.1766335066696812No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG8260.14589927650915668No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7920.13989373728238752No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7430.13123869545557312No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7350.1298256274022157No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7040.12434998869545558No Hit
CGGCAGACGGGCGGTGGTCTGACGGAACACGTTGTCATCAGTTT6910.12205375310874972No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6800.12011078453538322No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6730.11887434998869545No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6640.11728464842866831No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5940.10492030296179065No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5750.1015642663350667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)