FastQCFastQC Report
Wed 31 May 2023
EGAF00007930235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566144
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG84181.4869008591453765No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28030.4951037191951164No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15490.2736053018313362No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12760.22538435451051322No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG12510.2209685168437712No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG11480.20277526565679405No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9750.1722176690029392No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG8810.15561411937598915No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8470.14960858014922No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7840.13848066922903007No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7270.12841255934885823No Hit
ATCGAGAAATATGACCTGGTGGCTGTTCCGG7270.12841255934885823No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7200.12717612480217047No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6980.12329018765543749No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6870.12134721908207098No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6810.12028741804205291No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6380.11269217725525661No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6160.10880624010852363No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5960.10527356997513No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5960.10527356997513No Hit

[OK]Adapter Content

Adapter graph