FastQCFastQC Report
Wed 31 May 2023
EGAF00007930239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533418
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG81191.522070871249189No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17490.3278854481851006No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13550.2540221739798807No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7410.13891544717276133No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6650.12466770900119606No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.10929514939503354No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5720.10723297676493856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)