FastQCFastQC Report
Sun 21 May 2023
EGAF00007930247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570878
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37780.6617876323838018No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30120.5276083506458472No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27810.48714436359432317No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22200.38887468075490733No Hit
ATGTCCAACATGGACATCGATGGTATTAACA19800.3468341747273498No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18740.32826628456517853No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17330.3035674872739885No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16470.28850297261411373No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG13460.23577717130455192No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12150.21283006176451008No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10640.1863795767221718No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9960.17446810001436386No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9370.16413314228258927No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9280.16255662330655588No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8570.15011964027340344No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8540.14959413394805895No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8350.1462659272208773No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8050.14101086396743262No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7390.12944972480985428No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7260.1271725307333616No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7060.12366915523106513No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6770.11858926075273526No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6550.11473554770020916No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6250.10948048444676445No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6120.10720329037027176No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6090.10667778404492728No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5780.10124755201636776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)