FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505063
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12170.24096003864864385No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9280.18373945428590097No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8350.16532590983699064No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8280.1639399441257823No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7470.14790234089608623No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6580.13028077685358064No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6400.1267168650247593No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6150.12176698748472964No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5530.10949129118545609No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5190.10275945773101573No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5080.10058151161340269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)