FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505063
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG85371.6902841823693282No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19110.3783686391598672No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11930.23620815621021538No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8860.17542366001865115No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8690.17205774329143098No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7520.14889231640409215No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7240.14334845355925893No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7180.14216048294965183No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7040.13938855152723523No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6780.13424067888560437No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6100.12077701197672369No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5430.10751134016944422No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5230.10355143813742047No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)