FastQCFastQC Report
Sun 21 May 2023
EGAF00007930254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546370
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12830.23482255614327285No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10870.19894942987352893No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8880.16252722514047258No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8650.15831762358841078No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8300.15191170818309938No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT7040.12885041272397826No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6920.12665409887072862No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6520.11933305269322986No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6470.11841792192104253No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5910.10816845727254425No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5470.1001153064772956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)