FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546370
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21310.3900287351062467No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19020.34811574574006626No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12830.23482255614327285No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9500.17387484671559567No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9000.1647235389937222No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8820.16142906821384775No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8480.1552061789629738No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8130.14880026355766238No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8070.14770210663103758No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7210.13196185734941523No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6760.12372568039972912No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6270.11475739883229313No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6030.11036477112579388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)