FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535739
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG89031.6618166681910407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13760.25684148437952065No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11670.21782995077827078No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7730.14428667690797198No Hit
ATGACCAGCCTGCAGCTGCCGTCCTCCCCGA6140.11460804608214073No Hit
ATGAACCCAAACGATCTGGCAGATGAACTGG5700.10639509163977234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)