FastQCFastQC Report
Sun 21 May 2023
EGAF00007930259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560927
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29860.5323330843407431No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29500.5259151369072981No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15310.27294104223900795No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14870.2650968842647974No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13020.23211576550959392No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8250.14707796201644777No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7630.1360248303255147No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6800.12122789596507211No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5820.10375681684069407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)