FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506442
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70971.4013450701166175No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15520.3064516765987023No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14520.2867060788797138No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10270.2027872885740124No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9970.19686360925831586No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9150.18067221912874523No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8480.16744266865702293No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8470.16724521267983303No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5800.1145244667701336No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5670.11195753906666507No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5110.10090000434403151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)